PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0018.11.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 660aa    MW: 73615.7 Da    PI: 4.8363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0018.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13475521455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++Lq
  MapolyY_B0018.11.p 475 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAYIQELQ 521
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-6150236IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.77E-16469525No hitNo description
PROSITE profilePS5088817.358471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-18474536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-11475521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-18475532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MGTDGGLKAA WDEDNAMIEA FVGSGSFDLP FVPPDDVLGG RGLPISETAL QQRLQLLVEG  60
TSLNWTYAIF WQLSYYPNGE MVLGWGDGYF KGPKESENAD PRGTEKDQTC REEDQLIRRK  120
VLRELQALVC TGEDDTTAST GLDYVTDTEW FYLVSMSYFF SHGVGTPGQA LASGEYVWLL  180
EANKAPSHVC TRADLAKMAG IQTIACIPTK NGVVELGSTE LIFESWEVIN NIKEFFSEGI  240
FEQSRRYQKP HLSSGKIGAM GCTHVTYPTG IDISNDVISN SCVKCNTFDK LNASSLPSNV  300
DSLDYLFSDD ASLVEIPLET DKNHMQPVGV PTLQSRLIIE EDKTAVFSKP LYLSLDQGRT  360
AVSETGEILN PPEMTLNLRR SENQLQQKDS KFYLKKETMS VDSQSKDRAG ESANHQVVDA  420
KGVSLPSFVG RSSIESEQDV DSEAEVSYKD VVLVEQKPPR KRGRKPAHDR EEPLNHVQAE  480
RQRREKLNQR FYALRSVVPN VSKMDKASLL GDAIAYIQEL QQKLQIMELK CQSVPSSGRP  540
STSNHRGSRS HLDYSAQTGN TRSLHSYIYI LDQKPNVDVE LLGMEVMVRV NHLSEAYPTS  600
QLMFALQDLQ LEVQHANIST VEDRIFHLVI AKDRILFYSS SNPYECEECA DKGATPWCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-37452374193Transcription factor MYC3
4rqw_B2e-37452374193Transcription factor MYC3
4rru_A5e-371223212227Transcription factor MYC3
4rs9_A2e-37452374193Transcription factor MYC3
4ywc_A5e-371223212227Transcription factor MYC3
4ywc_B5e-371223212227Transcription factor MYC3
4yz6_A2e-37452374193Transcription factor MYC3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VWR60.0A0A2R6VWR6_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-47bHLH family protein