PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0001s0360.1
Common NameMTR_0001s0360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 254aa    MW: 29218.2 Da    PI: 8.0834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0001s0360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-16956148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd+ll+ ++ ++G g W++++++  ++R++k+c++rw++yl
  Medtr0001s0360.1  9 KGAWTYEEDKLLKACIDKYGEGKWHLVPQRAELNRCRKSCRLRWLNYL 56
                      79********************************************97 PP
2Myb_DNA-binding43.38.6e-1463107248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++ ++E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Medtr0001s0360.1  63 ESFAEDEVDMILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHTHL 107
                       66789999*************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.709156IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-20658IPR009057Homeodomain-like
SuperFamilySSF466891.09E-276103IPR009057Homeodomain-like
SMARTSM007172.8E-12858IPR001005SANT/Myb domain
PfamPF002495.6E-15956IPR001005SANT/Myb domain
CDDcd001671.98E-91156No hitNo description
PROSITE profilePS5129423.97457111IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2259111IPR009057Homeodomain-like
SMARTSM007179.7E-1461109IPR001005SANT/Myb domain
PfamPF002492.3E-1262107IPR001005SANT/Myb domain
CDDcd001679.37E-1067107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDMPRGVRKG AWTYEEDKLL KACIDKYGEG KWHLVPQRAE LNRCRKSCRL RWLNYLSPNI  60
KRESFAEDEV DMILRLHKLL GNRWSLIAGR LPGRTANDVK NYWHTHLHKK VVSRTQEEKK  120
EKTKETMKFH EIIRPQPRTF STHSPSLNGK HNINATPIVA ISTQHCEVSP NRDNKEITVP  180
NQIGRDIVGV SEPSLGNAPI PCAMWWDGLL NLQCGEKIGS GSSLQEENFI EFPNVDDSFW  240
DFNLCDYDSL LDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2491117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0001s0360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1999960.0FJ199996.1 Medicago truncatula MYB transcription factor LAP2 mRNA, complete cds.
GenBankJQ6902850.0JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443731.10.0transcription factor MYB113
SwissprotQ9FNV98e-61MY113_ARATH; Transcription factor MYB113
TrEMBLA0A396GVZ70.0A0A396GVZ7_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES993201e-153(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-62myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]