PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0005s0250.1
Common NameMTR_0005s0250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 89aa    MW: 10128.5 Da    PI: 5.9789
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0005s0250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.42.7e-071302857
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1 28 ieeLeekvkeLeaeNkaLkkeleelkkeva 57
                      +++Le+kv+eL +e ++L+ e+e+l+++v+
  Medtr0005s0250.1  1 MDQLEQKVDELREEVTRLRAEIERLTDLVS 30
                      68*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-4130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDQLEQKVDE LREEVTRLRA EIERLTDLVS LVTVTKDHLQ VQAPPRVRDK LPAWYQSDLS  60
CAFHQGAPGH DIEHCYALKA EIHKLVQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0005s0250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409148e-50AC140914.20 Medicago truncatula clone mth2-18h17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625008.22e-18uncharacterized protein LOC100801012
TrEMBLA0A072TVR39e-58A0A072TVR3_MEDTR; BZIP transcription factor
STRINGAES880232e-58(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]