PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0007s0330.2
Common NameMTR_0007s0330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 164aa    MW: 18879.8 Da    PI: 8.9845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0007s0330.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12958455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      +h+e Er+RR+++ +   +Lr+llP       ++K s ++ + +A++YI++Lq
  Medtr0007s0330.2  9 MHKETERQRRQEMSNLCTNLRSLLPIeY---IKGKRSISDHVNEAMHYINHLQ 58
                      7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-11362No hitNo description
SuperFamilySSF474595.76E-15475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.836557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-10778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00291163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MMEENKKWMH KETERQRRQE MSNLCTNLRS LLPIEYIKGK RSISDHVNEA MHYINHLQNK  60
VKQLQDKKEE LMKVSNLSRN VTTQNGSSSS NIQPFVIVQP FPGGLEIVCS YSFNKCLFPL  120
SRVLSMLLKE GLNLISCTSN MIEGRFIYTI RSEVNSACSI NYE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0007s0330.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630580.11e-110transcription factor bHLH36
TrEMBLA0A072TJH21e-116A0A072TJH2_MEDTR; Transcription factor
STRINGXP_004506301.12e-77(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]