PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0007s0380.1
Common NameMTR_0007s0380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 240aa    MW: 27739.5 Da    PI: 7.9397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0007s0380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-1371123155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+  h e+Er+RR+++ + ++ Lr+llP  +   ++K s ++   +Av+YIk++q
  Medtr0007s0380.1  71 RKIVHREIERQRRQEMATYYASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHMQ 123
                       5678*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.27E-1069126No hitNo description
SuperFamilySSF474592.22E-1369137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.87870122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1171141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-1171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-676128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEHTTFPLHQ FSNSPHKQHH KISQDLILDN NYASLLVNNS DKIFSFSCQP NNELLYEAAK  60
NQDNSFEQKK RKIVHREIER QRRQEMATYY ASLRSLLPLE FIKGKRSISD HMNEAVNYIK  120
HMQNNINELG TKRDELKKLS NSKLENIESN HASCNLNVQQ NNGILRIEFT SGLREEKLKL  180
SQLLNFLAKE GFEVDSCVTT EINGRLLQSV MCEVNNSNIV DQFELRKKIV MVIPTMACD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16982KRKIVHREIERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0007s0380.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311167e-31KT031116.1 Glycine max clone HN_CCL_215 bHLH transcription factor (Glyma10g38630.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630582.11e-176transcription factor bHLH118
TrEMBLA0A072TL371e-175A0A072TL37_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA16G32620.13e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-35bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]