PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0020s0020.1
Common NameMTR_0020s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 342aa    MW: 37574.1 Da    PI: 5.8691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0020s0020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.73e-36341242101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++e+isw+e+g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k+ll
  Medtr0020s0020.1  34 FLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRRGEKRLL 117
                       9*****************************************************************99.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Medtr0020s0020.1 118 CEIQRRK 124
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3725118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5530123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-3331123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAPSPAPVEN NGETTTTTVA TPTLESQRSI PTPFLTKTYN LVDDKSIDEV ISWNEDGSTF  60
IVWNPTVFAS NLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNEYFR RGEKRLLCEI  120
QRRKICSPTP SPSSVSVSAS TIAAETTTAT VAVPSPMPLT VIPTVMQMIS PSNSGEEQVI  180
SSSSSPARAP AELLDENERL RKENHLLNKE LADMRLLCNN IYSLMSNFAN NNSQTDGGAQ  240
GSRESGMTAV NPKPPLDLMP AVANRSSGEE MNPKLFGVAI GAKRVRENGC ENGEKEDDTL  300
LRLHQPGSTD VKSEPLDCSD GGNDRTAWLN QSRRKNQSLS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A8e-233412310110Heat shock factor protein 2
5hdk_B8e-233412310110Heat shock factor protein 2
5hdk_C8e-233412310110Heat shock factor protein 2
5hdk_D8e-233412310110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0020s0020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443333.10.0heat stress transcription factor B-2b
SwissprotQ9SCW42e-83HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A072TKJ10.0A0A072TKJ1_MEDTR; Heat shock transcription factor B2A
STRINGXP_004515711.11e-173(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-80heat shock transcription factor B2A
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]