PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0036s0150.1
Common NameMTR_0036s0150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 540aa    MW: 60016.9 Da    PI: 4.2607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0036s0150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.1e-5061332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       +pGfrFhPtdee+v++yLk+k++gk  +++++++ +diyk+ePwdLp+  k+k+++ ewyfFs  dkky tg r+nrat++gyWk+tgkd+ +
  Medtr0036s0150.1   6 APGFRFHPTDEEIVCFYLKRKLTGKLPPCFDHLAFIDIYKFEPWDLPNmsKLKTKDLEWYFFSALDKKYGTGCRTNRATDRGYWKTTGKDRVI 98 
                       69*********************************************5347777888************************************ PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++e+vg+kktLv++ grap+g++++Wvmheyr+
  Medtr0036s0150.1  99 KN-GEETVGMKKTLVYHLGRAPHGNRSNWVMHEYRM 133
                       99.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-564155IPR003441NAC domain
PROSITE profilePS5100555.0845155IPR003441NAC domain
PfamPF023657.2E-277133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSLYQAPGFR FHPTDEEIVC FYLKRKLTGK LPPCFDHLAF IDIYKFEPWD LPNMSKLKTK  60
DLEWYFFSAL DKKYGTGCRT NRATDRGYWK TTGKDRVIKN GEETVGMKKT LVYHLGRAPH  120
GNRSNWVMHE YRMIDEELAK TGGQDAYVLC RIFEKSGSGP KNGEKYGAPF VEAEWQNVDE  180
PVNPLPPVDN QLLEQVAAPA PDYAEFLQSL VAFDNDLLNE SVPTATDDNY LEILDLDQEL  240
DTSVTVGNAD LPPNFYYGEC SSFPQHSQSE AAFGIYDHQV GGLYGVDSVQ DGYNGETNHN  300
ENPLNFDFAS EDPDLYFDAA EYLRGLNEEY VETNDLKNLD GVDSTVIDPS VSELLDEYLE  360
CPDEEDITKY ICFDSESPIA NHVFEAQYSN GVLPKEDQGA ASNWVSGGEN AFVKQANKLL  420
AGIPAPPAFA SEFPSKEFAV GMHSAAEFSN SAHITTGIIS ITDITYSGNM MDWMAGKNGG  480
FDTIMSNEFS QTAAINSATG LVCRKTACML SHGWVYLMGF SVVILSMSLK IGSFMYMGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-43716119171NO APICAL MERISTEM PROTEIN
1ut4_B9e-43716119171NO APICAL MERISTEM PROTEIN
1ut7_A9e-43716119171NO APICAL MERISTEM PROTEIN
1ut7_B9e-43716119171NO APICAL MERISTEM PROTEIN
3swm_A1e-42716122174NAC domain-containing protein 19
3swm_B1e-42716122174NAC domain-containing protein 19
3swm_C1e-42716122174NAC domain-containing protein 19
3swm_D1e-42716122174NAC domain-containing protein 19
3swp_A1e-42716122174NAC domain-containing protein 19
3swp_B1e-42716122174NAC domain-containing protein 19
3swp_C1e-42716122174NAC domain-containing protein 19
3swp_D1e-42716122174NAC domain-containing protein 19
4dul_A9e-43716119171NAC domain-containing protein 19
4dul_B9e-43716119171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.135120.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0036s0150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443146.10.0NAC domain-containing protein 53
TrEMBLA0A072TIW70.0A0A072TIW7_MEDTR; NAC transcription factor-like protein
STRINGXP_004496133.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-89NAC domain containing protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]