PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0041s0110.1
Common NameMTR_0041s0110, MTR_7g101280, MtrDRAFT_AC148995g9v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 649aa    MW: 72449.2 Da    PI: 8.3317
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0041s0110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.32.2e-21131232199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f k+lt+sd+++ g ++ p+ +ae+       + +++ + ++  +d +g++W +++ yr++++r++lt+GW+ Fv++++L +gD++vF   ++
  Medtr0041s0110.1 131 FAKTLTQSDANNGGGFSCPRYCAETLfprldySANPPLQ-DIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFL--RS 220
                       89*********************999****995566664.9************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++ l+v+++r+
  Medtr0041s0110.1 221 ENGDLHVGIRRA 232
                       88889*****97 PP
2Auxin_resp93.82.8e-31304385283
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       ++  +++++F+vvY+Pr++t+eF vk++ +  al++++++GmRfkma+etedss++++  Gtv++v+++dp +W++S Wr+L+
  Medtr0041s0110.1 304 VRLGTNMQPFDVVYYPRSGTPEFFVKTSLIGMALQIRWCPGMRFKMAIETEDSSRISWfIGTVASVQAADP-SWSDSMWRLLE 385
                       5667899****************************************************************.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-36121235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-27126234IPR015300DNA-binding pseudobarrel domain
CDDcd100178.81E-19130231No hitNo description
PfamPF023624.0E-19131232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464131233IPR003340B3 DNA binding domain
SMARTSM010193.1E-16131233IPR003340B3 DNA binding domain
PfamPF065078.7E-24306384IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MKEKRKGCSP TEMNMESKKK LKNVNKSVDP QLWHAVAGGM VQMPEVNSQV FYFPQGHAEH  60
ACEPVNFSSY SKIPSFIPCR VEAIRYMANH ETDEVYAKLR LVPMNINQVS FDNDGVAGIN  120
VSETKDKHQS FAKTLTQSDA NNGGGFSCPR YCAETLFPRL DYSANPPLQD IFPKDVHGEK  180
WHFRHVYRGT PKRHLLTTGW SPFVSDKKLA SGDSIVFLRS ENGDLHVGIR RAKRRNNVGV  240
DPLSGWKSGS GIGICAAPPY GGFPSFSGEE DNKLRRNGKG NGLLISDGMM GRGKVKALEV  300
IEAVRLGTNM QPFDVVYYPR SGTPEFFVKT SLIGMALQIR WCPGMRFKMA IETEDSSRIS  360
WFIGTVASVQ AADPSWSDSM WRLLEVTWDE PELLKNVKRV NPWQVEIVSN MPSIPLSPFI  420
PPRKKLRLPQ LPDFPIDGQF PMPTFPNNLL SPNIPIFYLP ETSPAGMQGA RHGHFGVTLP  480
DFHNLPLGLF QPSFQQPFNN IATMPMTVPN NPALQKPNTS ENVSCSHSIS TSAQSSEKPD  540
HAKPHQLVLF GQTIQVDAGN ENSEKKMSNH LSDLHLQGLS SRSSDARFEW NAENQHEETL  600
AGETLEMKHS DFIRKARRLT ILMDSTSGAT TEDQQEKKEN HQFNCRAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-701540634388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0041s0110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489950.0AC148995.2 Medicago truncatula chromosome 7 clone mth2-49l23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625181.10.0auxin response factor 18
RefseqXP_024630427.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLQ2HV560.0Q2HV56_MEDTR; Auxin response factor
STRINGAES818530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-158auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]