PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0041s0120.1
Common NameMTR_0041s0120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 418aa    MW: 46851 Da    PI: 7.3541
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0041s0120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1792177181
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f k+lt+sd+++ g ++ p+ +ae +       g+++ +   +  +d +g++W +++ yr++++r++lt+GW+ Fv++++L +gD+vv
  Medtr0041s0120.1  92 FAKTLTQSDANNGGGFSCPRYCAEMIfprmdysGNPPFQ--GIYPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSVV 177
                       89*********************999******5544444..6********************************************98 PP
2Auxin_resp93.34.1e-31231312283
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       ++  +++++F+vvY+Pr++t+eF vk++ +  +l++++++GmRfkm +etedss++++  Gtv++v+++dp +Wp+S Wr+L+
  Medtr0041s0120.1 231 VRLGTNMQPFDVVYYPRSGTPEFFVKTSLIGITLQIRWCPGMRFKMPIETEDSSRISWfIGTVASVQAADP-SWPDSLWRLLQ 312
                       5667899****************************************************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-2882177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-2385177IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-1591177No hitNo description
SMARTSM010191.5E-592185IPR003340B3 DNA binding domain
PfamPF023624.2E-1592177IPR003340B3 DNA binding domain
PROSITE profilePS508638.83992196IPR003340B3 DNA binding domain
PfamPF065073.5E-23233312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MVQMPEVNSQ VFYFPQGHAE HACEPVNFSA YSKIPSFIPC RVEDIRYMAN HETDEVYAKL  60
RLVPMNINQV SFDNDGVAGI NVSETKDKHQ SFAKTLTQSD ANNGGGFSCP RYCAEMIFPR  120
MDYSGNPPFQ GIYPKDVHGE KWHFRHVYRG TPKRHLLTTG WSPFVSDKKL ASGDSVVGIG  180
ICPAPPYGGF TSFSEEEDNK LRRNGKGNGL LISDGMMGRG KVKVLEVIEA VRLGTNMQPF  240
DVVYYPRSGT PEFFVKTSLI GITLQIRWCP GMRFKMPIET EDSSRISWFI GTVASVQAAD  300
PSWPDSLWRL LQPSFQQPFN NISTMLMTLT NNSVLQKPNT SENVCSHSIS TSTQSLKKPD  360
HAKPHQLVLF GQTIQIDAGN ETSEKKMTNH LSDLHLQGLP TRSSDERFEW NPKNQCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-55132163376Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0041s0120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489950.0AC148995.2 Medicago truncatula chromosome 7 clone mth2-49l23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625181.10.0auxin response factor 18
RefseqXP_024630427.10.0auxin response factor 18
SwissprotQ653H71e-107ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A072TI810.0A0A072TI81_MEDTR; Auxin response factor
STRINGAES818530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-108auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]