PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0044s0120.1
Common NameMTR_0044s0120, MTR_010s0014
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 142aa    MW: 16271.2 Da    PI: 9.4096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0044s0120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05426223
                      EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                       C dC+ksF +k  L++H r  +
  Medtr0044s0120.1  4 FCFDCNKSFESKGALNVHKRFqC 26
                      6*****************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5351No hitNo description
PROSITE profilePS5015710.221330IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MLHFCFDCNK SFESKGALNV HKRFQCGAKT RCDRCGKLCS SVLSCYNHMK TCQPKKPKGA  60
LNVHKRFQCG AKTCCDRCGK LCSSVLSCYY HMKTCQPKKR KTIIVNEFEE FSKKIYWRTI  120
HTCSVYSIGF DLISISYLYS L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0044s0120.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453281e-141AC145328.23 Medicago truncatula clone mth2-21m18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7ZUP95e-99G7ZUP9_MEDTR; Uncharacterized protein
STRINGAES829371e-100(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]