PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0060s0090.1
Common NameMTR_0060s0090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 158aa    MW: 17816.6 Da    PI: 4.9117
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0060s0090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.81.3e-1671138269
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 
                       fY+ +A++ GFsvrk ++ +  rnge++++tfvCs++g +e++  + ++++r++++etr++C+ak++v 
  Medtr0060s0090.1  71 FYSWFARTSGFSVRKGQMVRD-RNGEVVQQTFVCSCQGLKEDRGLTkETRKREPKNETRCECNAKFRVY 138
                       9****************9998.8999***************99877467888899**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1571138IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDGRSQASNP LFEQGGPRIS SDFEDERCGN NNRNAEEING DVTGSSDAFE GSHDEPNERY  60
EFVGLDVAYL FYSWFARTSG FSVRKGQMVR DRNGEVVQQT FVCSCQGLKE DRGLTKETRK  120
REPKNETRCE CNAKFRVYLD ILAVFGNTKK LAYSLLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0060s0090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452469.24e-84uncharacterized protein LOC25497152
TrEMBLA0A072THD31e-113A0A072THD3_MEDTR; FAR1 DNA-binding domain protein
STRINGGLYMA18G18095.11e-23(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-07FAR1-related sequence 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]