PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0061s0010.1
Common NameMTR_0061s0010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15355.5 Da    PI: 6.6662
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0061s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.12.2e-081232143
                      HHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF 21 lKKAeELSvLCdaevaviifsst 43
                      +KK +E S+LC+++v+v++++++
  Medtr0061s0010.1  1 MKKVNEFSILCNVDVCVVLYAPN 23
                      8*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003194.0E-7123IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-7147IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKKVNEFSIL CNVDVCVVLY APNFEGQGFA KPEVWPKDTK EEQLKFFASL LDDKLDACIQ  60
KINMLKGYHK GKAIAHESHK PCSYPMVSEE GRHAQSHSSK YIGGNLINQA DSIAIYDPKI  120
GTEKKDRVEN DDSLSPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0061s0010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470391.13e-20MADS-box transcription factor 20
TrEMBLA0A072TJB49e-98A0A072TJB4_MEDTR; SRF-type transcription factor (DNA-binding and dimerization domain) protein
STRINGAES839923e-71(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-08M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]