PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0092s0100.1
Common NameMTR_0092s0100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 730aa    MW: 81433.8 Da    PI: 5.8652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0092s0100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.73.8e-993707282374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       +++L+++Ae +++g+ e a+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++   ++ ++   ++ s+++   ++ a+k fse+sP+l+f+
  Medtr0092s0100.1 370 IDQLFKAAELIDAGNPEHAHGILARLNHQISPMGKPFQRAAFYFKEALQLLLQS---NVNNSN-NNSFSPTSLLLKIGAYKSFSEISPVLQFA 458
                       689**************************************************9...444433.334444569999***************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++t Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p l+iT+++sp+++++ el+ t+e+L ++A e++++fe ++l+ ++l+
  Medtr0092s0100.1 459 NFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLMQYAGEINMSFELEILTLESLN 551
                       ***************************************************************************************999999 PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres 279
                       +++ +   ++  Ea++Vnl +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys l++sl ++++  + 
  Medtr0092s0100.1 552 SVS-WPQPLRDCEAVVVNLPICSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMVFALQSYSGLLESLdAVSVNVHP 637
                       995.4446899*********9777666......677788*********************************************667777777 PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                       +  +++E+ +l+++i+++v  + ++    + +   W++ l ++GF+p+++s+++++qa++l+++++++g++ve++++slvl+W+++ L+svS 
  Medtr0092s0100.1 638 DVLQMIEKYYLQPAIEKLVLGRLRS----QDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVST 726
                       999*****************98887....666679********************************************************** PP

              GRAS 373 Wr 374
                       Wr
  Medtr0092s0100.1 727 WR 728
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.469343708IPR005202Transcription factor GRAS
PfamPF035141.3E-96370728IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MKAMPLPFEE YIGKGVLDLG SSVVASSDSY LFSQQQEQFL QRWRENCCYA GIEPNSVVVF  60
DLKKPNQQTT PTSSSTLSSS HGSAGGGAST DSTTGAAAKD KNIPQVEGKR CGMEDWESVL  120
SESPSQDQDH SILKLIMEDI EDASMGLSKL LQVGTSNSHS QQDVEFNGFS FMDQQSSVLD  180
PISSNGNNNN FVTSIVSSSF VAFIFSDFPF GSRGMNQIQN PNFSSSQVSF SHGGLFHQHQ  240
QQSIGSLDQK LPHQFVMNQN QAQFMPNPSL VFPFTYSQLQ ENQEIQLQPP AKRLNCGTNY  300
EIPKIPFLDS GQEMFLRRQQ QHQQQQHQQQ LQLLPHHLQQ RPMAPKQKMG NPGSGGGEDV  360
SAHQFQQAII DQLFKAAELI DAGNPEHAHG ILARLNHQIS PMGKPFQRAA FYFKEALQLL  420
LQSNVNNSNN NSFSPTSLLL KIGAYKSFSE ISPVLQFANF TSNQALLEAV EGFDRIHIID  480
FDIGFGGQWS SFMQELALRN GGAPALKITA FVSPSHHDEI ELSFTNENLM QYAGEINMSF  540
ELEILTLESL NSVSWPQPLR DCEAVVVNLP ICSFSNYPSY LPLVLRFVKQ LMPKIVVTLD  600
RSCDRTDAPF PQHMVFALQS YSGLLESLDA VSVNVHPDVL QMIEKYYLQP AIEKLVLGRL  660
RSQDRTLPWK NLLLSSGFSP LTFSNFTESQ AECLVQRIPG RGFHVEKKQN SLVLCWQRKD  720
LISVSTWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3238272816375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.117740.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0092s0100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442774.10.0scarecrow-like protein 6
SwissprotO813161e-138SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A072TIS20.0A0A072TIS2_MEDTR; GRAS family transcription regulator
STRINGXP_004515465.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-118GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]