PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0092s0100.2
Common NameMTR_0092s0100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 733aa    MW: 81808.2 Da    PI: 5.761
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0092s0100.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.73.8e-993737312374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       +++L+++Ae +++g+ e a+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++   ++ ++   ++ s+++   ++ a+k fse+sP+l+f+
  Medtr0092s0100.2 373 IDQLFKAAELIDAGNPEHAHGILARLNHQISPMGKPFQRAAFYFKEALQLLLQS---NVNNSN-NNSFSPTSLLLKIGAYKSFSEISPVLQFA 461
                       689**************************************************9...444433.334444569999***************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++t Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p l+iT+++sp+++++ el+ t+e+L ++A e++++fe ++l+ ++l+
  Medtr0092s0100.2 462 NFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLMQYAGEINMSFELEILTLESLN 554
                       ***************************************************************************************999999 PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres 279
                       +++ +   ++  Ea++Vnl +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys l++sl ++++  + 
  Medtr0092s0100.2 555 SVS-WPQPLRDCEAVVVNLPICSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMVFALQSYSGLLESLdAVSVNVHP 640
                       995.4446899*********9777666......677788*********************************************667777777 PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                       +  +++E+ +l+++i+++v  + ++    + +   W++ l ++GF+p+++s+++++qa++l+++++++g++ve++++slvl+W+++ L+svS 
  Medtr0092s0100.2 641 DVLQMIEKYYLQPAIEKLVLGRLRS----QDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVST 729
                       999*****************98887....666679********************************************************** PP

              GRAS 373 Wr 374
                       Wr
  Medtr0092s0100.2 730 WR 731
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.469346711IPR005202Transcription factor GRAS
PfamPF035141.3E-96373731IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MNEMKAMPLP FEEYIGKGVL DLGSSVVASS DSYLFSQQQE QFLQRWRENC CYAGIEPNSV  60
VVFDLKKPNQ QTTPTSSSTL SSSHGSAGGG ASTDSTTGAA AKDKNIPQVE GKRCGMEDWE  120
SVLSESPSQD QDHSILKLIM EDIEDASMGL SKLLQVGTSN SHSQQDVEFN GFSFMDQQSS  180
VLDPISSNGN NNNFVTSIVS SSFVAFIFSD FPFGSRGMNQ IQNPNFSSSQ VSFSHGGLFH  240
QHQQQSIGSL DQKLPHQFVM NQNQAQFMPN PSLVFPFTYS QLQENQEIQL QPPAKRLNCG  300
TNYEIPKIPF LDSGQEMFLR RQQQHQQQQH QQQLQLLPHH LQQRPMAPKQ KMGNPGSGGG  360
EDVSAHQFQQ AIIDQLFKAA ELIDAGNPEH AHGILARLNH QISPMGKPFQ RAAFYFKEAL  420
QLLLQSNVNN SNNNSFSPTS LLLKIGAYKS FSEISPVLQF ANFTSNQALL EAVEGFDRIH  480
IIDFDIGFGG QWSSFMQELA LRNGGAPALK ITAFVSPSHH DEIELSFTNE NLMQYAGEIN  540
MSFELEILTL ESLNSVSWPQ PLRDCEAVVV NLPICSFSNY PSYLPLVLRF VKQLMPKIVV  600
TLDRSCDRTD APFPQHMVFA LQSYSGLLES LDAVSVNVHP DVLQMIEKYY LQPAIEKLVL  660
GRLRSQDRTL PWKNLLLSSG FSPLTFSNFT ESQAECLVQR IPGRGFHVEK KQNSLVLCWQ  720
RKDLISVSTW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3238573116375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.117740.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0092s0100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442774.10.0scarecrow-like protein 6
SwissprotO813161e-138SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A072TGW30.0A0A072TGW3_MEDTR; GRAS family transcription regulator
STRINGXP_004515465.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-118GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]