PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0095s0040.1
Common NameMTR_0095s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 247aa    MW: 26908.8 Da    PI: 6.5218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0095s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Medtr0095s0040.1  5 KQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEfnrvlFIRSNVDLKDKWRNL 56
                      79***************************99999998669999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.089161IPR017930Myb domain
SuperFamilySSF466892.01E-15259IPR009057Homeodomain-like
SMARTSM007171.0E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-13456IPR009057Homeodomain-like
PfamPF002491.3E-6556IPR001005SANT/Myb domain
CDDcd116606.23E-21656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKHGVGKWRT IIKDPEFNRV LFIRSNVDLK DKWRNLSVMG  60
NGSSSREKSK GAIKRLNHPV PKQDDNSMAI TAVTGPSDDD EIVDAQPLQV SRDMPHIPGP  120
KRFIVKLDNL ILEAISSLNE LGGSNTTTIA SFIEELILVQ RGVLATLFSI LTPTLTISLD  180
EIHVGFTTCE THFQNVGSTL ILPNKRVGVR ESVPSTPLVQ ILVSNLSEGE PWHSVKVATD  240
DMEVIG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.174780.0stem
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0095s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1398050.0BT139805.1 Medicago truncatula clone JCVI-FLMt-9K17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446890.11e-103telomere repeat-binding factor 1 isoform X2
RefseqXP_013446891.21e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627975.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627976.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627977.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627978.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627979.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627980.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627981.11e-103telomere repeat-binding factor 1 isoform X1
RefseqXP_024627982.11e-103telomere repeat-binding factor 1 isoform X2
RefseqXP_024627983.11e-103telomere repeat-binding factor 1 isoform X2
RefseqXP_024630321.11e-104telomere repeat-binding factor 1
SwissprotQ8VWK41e-54TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A072TIM71e-178A0A072TIM7_MEDTR; Myb-like DNA-binding domain protein
STRINGAET048021e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-57telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]