PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0105s0070.1
Common NameMTR_0105s0070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 87aa    MW: 9345.87 Da    PI: 8.1295
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0105s0070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70256.51.1e-174375941
            DUF702  9 qdCGnqakkdCaheRCRtCCksrgfdCathvks 41
                       dCGnqakkdCa++RCR CCk+++f+C+th+k 
  Medtr0105s0070.1 43 TDCGNQAKKDCAYSRCRSCCKNKDFNCHTHIKT 75
                      69*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.9E-144376IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-164475IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MAFPISHLFT LTLTPAVGFP PGSDPSAPIT VITTKLFPVS LLTDCGNQAK KDCAYSRCRS  60
CCKNKDFNCH THIKTSEALG FLLIEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0105s0070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1401041e-64AC140104.22 Medicago truncatula clone mth2-10g22, complete sequence.
GenBankAC1423951e-64AC142395.41 Medicago truncatula clone mth2-18g1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JEL21e-56G7JEL2_MEDTR; Zinc finger, LRP1 type protein, putative
STRINGAES699992e-57(Medicago truncatula)
STRINGAES873142e-57(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.17e-14SHI-related sequence3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]