PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0117s0040.1
Common NameMTR_0117s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 247aa    MW: 28378 Da    PI: 7.809
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0117s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.8e-2874132259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYG K++kg+++pr+YYrCt++ +Cp++k+ve++++dp+++++tYe eH+h+
  Medtr0117s0040.1  74 ADEYSWRKYGSKPIKGTPHPRGYYRCTMSkNCPARKRVEKAKDDPNILVVTYEFEHHHQ 132
                       69**************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3061133IPR003657WRKY domain
PROSITE profilePS5081127.07268134IPR003657WRKY domain
SuperFamilySSF1182901.28E-2471132IPR003657WRKY domain
SMARTSM007747.3E-3373133IPR003657WRKY domain
PfamPF031061.4E-2575132IPR003657WRKY domain
PfamPF031412.0E-6137176IPR004159Putative S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032259Biological Processmethylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQPPDYFCHE PICDSPFLYH DHHMWQNQEN NALQYNDVHE PTKISNQSLV AEENRFRTVE  60
RVPCISSRIA DIPADEYSWR KYGSKPIKGT PHPRGYYRCT MSKNCPARKR VEKAKDDPNI  120
LVVTYEFEHH HQSFADTVAS WGAYIQSRNI ITLSIATRDT HEAHVPALIG VLASKRPICS  180
FPYLDSSPFE VKARCNLLRG YLGYIDESLS HGIVSSFQFP RKPTCSQQFA TLDLNRLLFQ  240
RNIGFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-16711311574Probable WRKY transcription factor 4
2ayd_A7e-1661131271WRKY transcription factor 1
2lex_A8e-16711311574Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0117s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9363685e-41CR936368.12 M.truncatula DNA sequence from clone MTH2-4O11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630299.13e-85probable WRKY transcription factor 7
TrEMBLA0A072TGH70.0A0A072TGH7_MEDTR; WRKY DNA-binding protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.22e-36WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]