PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0130s0060.1
Common NameMTR_0130s0060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 244aa    MW: 27569.4 Da    PI: 6.2779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0130s0060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.92e-081271632055
                       S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
              WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                       + r+ Y+C s  gCp++k+ver+ +d ++++i   g+
  Medtr0130s0060.1 127 NDRGCYKCNSVrGCPARKHVERALDDASMLDIEDAGT 163
                       56999***8877******************9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF040062.9E-792132IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10
PROSITE profilePS5081110.257127156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-7127158IPR003657WRKY domain
SuperFamilySSF1182909.42E-6127158IPR003657WRKY domain
PfamPF031064.8E-6127158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0005732Cellular Componentsmall nucleolar ribonucleoprotein complex
GO:0034457Cellular ComponentMpp10 complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRIKIQGTWS INSLVFGQID HRSWIGIRQN CSPKLVWFRR LLSFEIAGKV FRWIGLFGDF  60
GIGFGVREWF LKNHFCLGLS CDRGLECDYV IEDMSFQTNV TALAVEEIAP VAVSDAAMLA  120
PEEFWNNDRG CYKCNSVRGC PARKHVERAL DDASMLDIED AGTFQATFAS SIWAADTIFF  180
QDNEIGQSML WGARERELKV AKKLKTQTVS GYSNDSNPFG DSNLNEKLDW IITKRKEGDT  240
RAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.101514e-40leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0130s0060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1798944e-54CU179894.1 Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072TI791e-180A0A072TI79_MEDTR; WRKY DNA-binding protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-11WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]