PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0137s0040.1
Common NameMTR_0137s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 114aa    MW: 13083.7 Da    PI: 6.7855
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0137s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.53.9e-125098150
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50
                      +fYn+Y++++GF +r+++ +ksk++g  t+r+f+C keg+ ++ +++ ++
  Medtr0137s0040.1 50 EFYNKYSRRIGFGIRREYGNKSKKDGILTSRRFTCFKEGYFHTPRSH-RQ 98
                      6**************************************98776665.23 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-95098IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MNGSTIPIVE GVEKLRNNID VNIVQNGEET VVDYIPHLEM EFESEAVAYE FYNKYSRRIG  60
FGIRREYGNK SKKDGILTSR RFTCFKEGYF HTPRSHRQIS ESRACQVVVA DES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0137s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221631e-135AC122163.20 Medicago truncatula clone mth2-16l2, complete sequence.
GenBankAC1260061e-135AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633609.12e-51protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_024633610.15e-53protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A072TG917e-78A0A072TG91_MEDTR; FAR1 DNA-binding domain protein
STRINGAES687202e-50(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-12FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]