PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0160s0030.1
Common NameMTR_0160s0030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 362aa    MW: 41342.6 Da    PI: 4.8185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0160s0030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013426123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ykC+ C +sF++   L  H+r+H
  Medtr0160s0030.1  4 YKCKLCYRSFNNGRALGGHMRSH 26
                      9*********************9 PP
2zf-C2H214.30.00012240262123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ykC+ C+k+F++   L  H  +H
  Medtr0160s0030.1 240 YKCETCNKVFKSYQALGGHRASH 262
                       9************9999998887 PP
3zf-C2H211.70.00081286308123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C ++F++   L  H rtH
  Medtr0160s0030.1 286 HECPVCFRVFNSGQALGGHKRTH 308
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-8326No hitNo description
SMARTSM003550.023426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367426IPR007087Zinc finger, C2H2
PfamPF139122.8E-8427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-8235262No hitNo description
PfamPF139126.1E-12239264IPR007087Zinc finger, C2H2
SMARTSM003550.01240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-5282309No hitNo description
PfamPF139123.1E-11285308IPR007087Zinc finger, C2H2
SMARTSM003550.15286308IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286286308IPR007087Zinc finger, C2H2
PROSITE patternPS000280288308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDKYKCKLCY RSFNNGRALG GHMRSHMMNL LVTKQEEESS RTVQLSFEAE SAPSSSSSSE  60
DDDVDEKGLN YGLRENPKRS IRLVDQEFSF PQVDTSSVIL QDIESETESS KNNPTRKRSK  120
RVWKIRGFDQ KYYNESATKK MKFFNKNDSS VVEHEPVSSV SDATTEEDVA FCLMQLSRDK  180
WNRQNEQYED VEDEDDDDEA EEEEEEEDEI EIERSLEDSD ESQELLKVCK NNNKVRKGRY  240
KCETCNKVFK SYQALGGHRA SHKKIKPNIT VEESSPEFEI VEKKVHECPV CFRVFNSGQA  300
LGGHKRTHVI HGSSSTTVPI FSSKRVTKSV IDLNLPAPID DDEVSQIENS AVSDAEFLKT  360
R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0160s0030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442483.10.0zinc finger protein ZAT9 isoform X2
TrEMBLA0A072THU20.0A0A072THU2_MEDTR; C2H2-type zinc finger protein, putative
STRINGXP_004494014.11e-175(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-63C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]