PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0193s0090.1
Common NameMTR_0193s0090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 208aa    MW: 23782 Da    PI: 9.5888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0193s0090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15956148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd  l+ ++ ++G g W++I+++ g++R++k+c++rw +yl
  Medtr0193s0090.1  9 KGAWTYEEDNCLKAYILKHGVGKWHLIPERTGLNRCRKSCRLRWVNYL 56
                      79********************************************97 PP
2Myb_DNA-binding46.39.5e-1562107148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       r  ++++E +l+++++++lG++ W++Ia++++ gR+++++k++w+++l
  Medtr0193s0090.1  62 REDFSKDEADLILRLHNLLGNR-WTLIAARLQ-GRSANDVKNYWNTHL 107
                       6689******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.266460IPR017930Myb domain
SuperFamilySSF466897.19E-286103IPR009057Homeodomain-like
SMARTSM007173.9E-12858IPR001005SANT/Myb domain
PfamPF002492.4E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-201063IPR009057Homeodomain-like
CDDcd001673.18E-91156No hitNo description
PROSITE profilePS5129417.95761111IPR017930Myb domain
SMARTSM007171.8E-1461109IPR001005SANT/Myb domain
PfamPF002494.3E-1462107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2164111IPR009057Homeodomain-like
CDDcd001673.40E-1065107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MANTSGVRKG AWTYEEDNCL KAYILKHGVG KWHLIPERTG LNRCRKSCRL RWVNYLNPYI  60
NREDFSKDEA DLILRLHNLL GNRWTLIAAR LQGRSANDVK NYWNTHLRKN VVLGAKENTE  120
KEKPNEIIKA HDAIKEPRLN VKPNPVTHPL LTSKTFGDVS RDRDDSSDTM VPDQIDSQPN  180
LDNAPILCLQ SGCSSSQEGK YKLFKWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2191117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0193s0090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442390.11e-154transcription factor MYB114
SwissprotQ9FNV92e-46MY113_ARATH; Transcription factor MYB113
TrEMBLA0A072TSA41e-152A0A072TSA4_MEDTR; R2R3-myb transcription factor
STRINGAES993027e-89(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-48myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]