PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0246s0020.1
Common NameMTR_0246s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 384aa    MW: 43106.3 Da    PI: 4.4788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0246s0020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10199243554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ ++f  L  l+P++     kK++Ka++L + + Y+k+L
  Medtr0246s0020.1 199 HIMAERKRREKLSQSFIALAALVPNL-----KKMDKASVLAESIIYVKEL 243
                       899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16198258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-8199243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-11199248No hitNo description
SuperFamilySSF474594.45E-15199260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEINNTPMN VSEETSKWLS DLEMDEYNLF PEECNLNFLD ADEEEFLPQE QTQQQCLSSE  60
SNSTTFTNSF TDETNFDSFD FDFEIERPTM ELNTIFSDNS IIETISPKLS PSSSNSSLHS  120
QILSFDNLPN SPATNTPQFC GLTPTLISKS KQNKTVLVSP PQIRNIHVST QNPIGLSKNQ  180
NFATKTSQTK RSRANADDHI MAERKRREKL SQSFIALAAL VPNLKKMDKA SVLAESIIYV  240
KELKERLEVL EEQNKKTKVE SVVVLKKPDH SIDDDDDDDD NSSCDESIEG ATDSSVQVQA  300
RVSGKEMLIR IHCEKHKGIL VKVMAEIQSF QLFAVNSSVL PFGDSIDITI IAEMGERYNL  360
SIKELVKNLH MAALKFMSSK ITD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRE
2203208RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.242770.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0246s0020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1481190.0BT148119.1 Medicago truncatula clone JCVI-FLMt-13D17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442259.10.0transcription factor bHLH18
TrEMBLA0A072TFG10.0A0A072TFG1_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES908100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-41bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]