PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0247s0040.1
Common NameMTR_0247s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 180aa    MW: 20926.7 Da    PI: 10.0225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0247s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-16956148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd  l+ ++ ++G g W++I+++ g++R++k+c++rw +yl
  Medtr0247s0040.1  9 KGAWTYEEDNCLKAYILKHGVGKWHLIPERTGLNRCRKSCRLRWVNYL 56
                      79********************************************97 PP
2Myb_DNA-binding49.59.6e-1662107148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       r +++++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Medtr0247s0040.1  62 RENFSKDEVDLILRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 107
                       789*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.888456IPR017930Myb domain
SuperFamilySSF466896.79E-296103IPR009057Homeodomain-like
SMARTSM007173.9E-12858IPR001005SANT/Myb domain
PfamPF002491.9E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-201063IPR009057Homeodomain-like
CDDcd001671.44E-91156No hitNo description
PROSITE profilePS5129422.74857111IPR017930Myb domain
SMARTSM007171.4E-1561109IPR001005SANT/Myb domain
PfamPF002491.7E-1462107IPR001005SANT/Myb domain
CDDcd001671.17E-1164107No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2364111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MANTSGVRKG AWTYEEDNCL KAYILKHGVG KWHLIPERTG LNRCRKSCRL RWVNYLNPYI  60
NRENFSKDEV DLILRLHNLL GNRWSLIAGR LPGRTANDVK NYWNTHLRKK VESEAKEKKE  120
KEKSNETMKA HEVIKPRPIT LSSRSHFVHD SNKDRYVPIY QDDSSETMVP SQIGGDYASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2491137110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0247s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442258.21e-132transcription factor MYB90
SwissprotQ9FNV93e-54MY113_ARATH; Transcription factor MYB113
TrEMBLA0A072TH521e-131A0A072TH52_MEDTR; Myb transcription factor (Fragment)
STRINGAES993098e-89(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-53myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]