PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0363s0040.1
Common NameMTR_0363s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 246aa    MW: 27429.8 Da    PI: 9.193
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0363s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702106.64e-33122216699
            DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssae 95 
                         CqdCGn+akkdC+++RCRtCCk rgfdC+thvkstW+pa+ rr+r    a    ++    a++ +kr++ l   ++++ +a s+++ s+a 
  Medtr0363s0040.1 122 RVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVVAEGGDSDGG--ASSGTKRQKILmtsSQNNVAANSHSSSSNAA 212
                       47*********************************************7766665444433..5555555555522122233333333333333 PP

            DUF702  96 skke 99 
                       +++ 
  Medtr0363s0040.1 213 TRTR 216
                       3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-29123214IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.8E-26123165IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNMLGLRDLV LIAQTPSSLH NQQNQTISSD HNPNLPLPSS SALSVGLGIF PLLTTTHPHH  60
QNPNNNNNND NIHQDSNFWN LKMCQPQQVM MMNSSRKRVE EEDDDVRNKN LMMGCEENGE  120
FRVCQDCGNR AKKDCSYKRC RTCCKGRGFD CSTHVKSTWI PASMRRDRSM VVAEGGDSDG  180
GASSGTKRQK ILMTSSQNNV AANSHSSSSN AATRTRIYYS SANSSLLPLR VHVRSYKIWQ  240
KNLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0363s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442018.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A072TGC40.0A0A072TGC4_MEDTR; Zinc finger, LRP1 type protein, putative
STRINGAET023211e-160(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-22Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]