PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0402s0040.1
Common NameMTR_0402s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 493aa    MW: 57182.1 Da    PI: 9.8314
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0402s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.91.7e-2340130191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                       +fYneY+k +GF +r+++ +ks+ +g  t+r+f+C keg r  +k++ + + ++rae rtgC a++++++++  +k++v ++  eHnHel+p
  Medtr0402s0040.1  40 DFYNEYSKIIGFGIRREYGNKSRVDGVLTSRRFTCFKEGVRGVDKRR-QPKGEPRAEIRTGCLARMVISLDRkIEKYKVVDFIAEHNHELQP 130
                       6******************************************9999.99********************9989****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1940130IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
CVNKLVNNIH EQNVQRGQGS IANNVPHLEM NFDYEAAAYD FYNEYSKIIG FGIRREYGNK  60
SRVDGVLTSR RFTCFKEGVR GVDKRRQPKG EPRAEIRTGC LARMVISLDR KIEKYKVVDF  120
IAEHNHELQP EHVHMIRSHR RISDTQASQI VLGDESGLRP KDLHEYISKQ AGGIKTVGFT  180
KKDFTNYLET KRKQSLKYGE HNILEGSWLH TIFQLKEKWA WTYVRKTFTA ELLMVNETKS  240
QKLNMSQKNK LPRLKMKKAR MLIQAANVYT PRIFEEFQEE YEEYQDTCIK DLKYGLYVVT  300
NYDNPTERMV MGNAMEQKQW TRNARLGSDQ DWKGRHVELD IKAHFIKRYN ELCPRMVKLT  360
NKASETHETY TFLSKVYEES SKIIDDMLAK KYVDGESSGM VHVSISIAND EIDNVDTVGM  420
AKGIANRECS RKQKKRYKSW IEKKDKKTKM CSKRKRSGEN LVQSLPQETT VQATQSSQVG  480
NGTLHQATIQ ES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433455KKRYKSWIEKKDKKTKMCSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0402s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350210.0AC235021.3 Medicago truncatula strain A17 clone WTSI_1018-172G23, complete sequence.
GenBankAC2397170.0AC239717.2 Medicago truncatula strain A17 clone WTSI_1018-144o6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628698.11e-165protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072TFJ20.0A0A072TFJ2_MEDTR; FAR1 DNA-binding domain protein (Fragment)
STRINGAES597591e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-28FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]