PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0450s0040.1
Common NameMTR_0450s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 345aa    MW: 38909.8 Da    PI: 8.2401
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0450s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.65.8e-23169222155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprl+Wt++LH+rF++a++q+ G    +Pk+ile+m+v+ Lt+e+v+SHLQk+R+
  Medtr0450s0040.1 169 KPRLVWTNNLHSRFLNAIRQI-GLGDVVPKKILEIMNVPNLTRENVASHLQKHRM 222
                       79*******************.9999****************************7 PP
2Response_reg63.31.2e-21101181109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vd ++  +  l+++l   +y +v++a+d++ al++l++++  +Dli+    + gm+G+e+ k+i+ e  +lp+iv++  + e+ +   l+
  Medtr0450s0040.1  10 VLVVDHDDESLASLTNILMTWQY-KVQTAKDAHHALATLRDSQilFDLIISEFHIFGMNGFEFQKQIQDEF-QLPVIVMSKDNREDIISMTLE 100
                       89*********************.*********************************************99.********************* PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga  + +Kpf pe+ ++
  Medtr0450s0040.1 101 HGAAHYMVKPFCPEDFRD 118
                       ***********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.17E-246127IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.3E-277142No hitNo description
SMARTSM004482.6E-198120IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.6189124IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-1710118IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.77E-2111123No hitNo description
SuperFamilySSF466891.2E-18167226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-24168226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23169222IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSYDKSNIQV LVVDHDDESL ASLTNILMTW QYKVQTAKDA HHALATLRDS QILFDLIISE  60
FHIFGMNGFE FQKQIQDEFQ LPVIVMSKDN REDIISMTLE HGAAHYMVKP FCPEDFRDIW  120
KYAVEGKKNR LFIDSLFAES EEEETKNKCS KRKSFGDHQD EGEFGVVKKP RLVWTNNLHS  180
RFLNAIRQIG LGDVVPKKIL EIMNVPNLTR ENVASHLQKH RMFLKSVQEK GMEGGVSQRA  240
LNSKFASDLP ISVVNEIAER RKNRRYSNLS VFQAKNSFND GASTSNSSNP SLFQAKNSLK  300
DGASTSNSSN LSLFQANNSF NDGTSTGYPS YGGRKGTMAA SFLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-19169225157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0450s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441872.20.0two-component response regulator ARR10
TrEMBLA0A072TEW60.0A0A072TEW6_MEDTR; Response regulator receiver domain protein (Fragment)
STRINGAES782531e-102(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-50response regulator 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]