PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0558s0020.1
Common NameMTR_0558s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 297aa    MW: 33925.5 Da    PI: 8.4112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0558s0020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.81.7e-1850157190
              FAR1   1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgk 75 
                       +fY +YA+++GFsvr+  ++k+    k+++++   ++vC+k+g+++ +  +             +  + ++++e+r+gCka++ +k+++  ++
  Medtr0558s0020.1  50 DFYGNYAYNTGFSVRTMLKSKNnsqnKKSDKVHYVRYVCNKQGFKKGSLLNpnnrptsdspvviEFVKVKEKPEERVGCKARIYLKLDEvLNV 142
                       6*************98655555455689999***************999888999999999999888999*******************99** PP

              FAR1  76 wevtkleleHnHela 90 
                       +++++ +  H H+l 
  Medtr0558s0020.1 143 YKIYRWDVAHCHPLH 157
                       *************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1550157IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDLISTSSES GQLSVETSSL IHADSSQCYS PSNKESWKSL VFKTIKEIED FYGNYAYNTG  60
FSVRTMLKSK NNSQNKKSDK VHYVRYVCNK QGFKKGSLLN PNNRPTSDSP VVIEFVKVKE  120
KPEERVGCKA RIYLKLDEVL NVYKIYRWDV AHCHPLHKPE HLCYLRSFRE VNEVQGQLAL  180
INSKAGMSMR TSYEVIGQGV GGTENLPFRF SDLKNYLMTI RQKEMVVGEA TIIQEFFRNE  240
ALSKPSFYYD IQVDAAENIA SIFWADGIMQ LDYSLFGDVI SLDTTYRTNN QYRPLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0558s0020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1450230.0AC145023.4 Medicago truncatula chromosome 6 clone mth2-30j24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441754.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072TE130.0A0A072TE13_MEDTR; FAR1 DNA-binding domain protein
STRINGAES614310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-26FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]