PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0604s0020.1
Common NameMTR_0604s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 77aa    MW: 9063.42 Da    PI: 10.4592
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0604s0020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.81.5e-12674169
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69
                      kfYn Y+   GF  r+s+  k+ +++ ++++ fv  +eg  + ++ + +e++r++++++r+gC ak++v+
  Medtr0604s0020.1  6 KFYNMYGCVHGFACRRSRVVKN-KDRDVIQQAFVYHREGLWDARNVNnHERKREHKPTSRCGCMAKIQVH 74
                      7********************9.5555************988777664788888999**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-10674IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
RVVAFKFYNM YGCVHGFACR RSRVVKNKDR DVIQQAFVYH REGLWDARNV NNHERKREHK  60
PTSRCGCMAK IQVHVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0604s0020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1481557e-84AC148155.18 Medicago truncatula clone mth2-9p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627844.16e-25protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072TDV71e-49A0A072TDV7_MEDTR; FAR1 DNA-binding domain protein (Fragment)
STRINGAES990522e-22(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-08FAR1-related sequence 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]