PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0632s0010.1
Common NameMTR_0632s0010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 133aa    MW: 15493.1 Da    PI: 10.1381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0632s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000272054744
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                      + E++R+ ++ ++++ Lr +l  +   + k  + ++i 
  Medtr0632s0010.1 20 AEEKKRVIDMTKSLAALRNILTDL---KEKNKESVTII 54
                      67*******************998...55545555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MIIWLAPKLA GHLLAGRLKA EEKKRVIDMT KSLAALRNIL TDLKEKNKES VTIIKKVYNA  60
RTRWRKGQRD DKTEMQYLIS KLDKHKYVYF TRPISEETTL EDILFAHLES INMLNTFPTV  120
LVMDSTYKTD TY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967ARTRWRKGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0632s0010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2075251e-134AC207525.2 Medicago truncatula chromosome 2 BAC clone mte1-10b3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441686.17e-93uncharacterized protein LOC25481279
TrEMBLA0A072TEQ22e-91A0A072TEQ2_MEDTR; Otubain, putative
STRINGAES971561e-49(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]