PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0853s0010.1
Common NameMTR_0853s0010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 167aa    MW: 18818.4 Da    PI: 8.4087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0853s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.12.2e-1640128290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                        Y ++Ak+ GF +r+ ++k++          fvCs+ gk+ ++++k      t+k++++ +++rt+Cka+l+v+k k + kw ++++++ HnH
  Medtr0853s0010.1  40 LYTSFAKKEGFGIRTLSTKTN-------LCIFVCSNVGKHVDNNDKeesntiTVKSKKKCSTSRTDCKATLVVSKAKmRPKWTIITFNNTHNH 125
                       7*************9987776.......567********9888877789999999999*******************9*************** PP

              FAR1  88 ela 90 
                       +++
  Medtr0853s0010.1 126 AMV 128
                       997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1240128IPR004330FAR1 DNA binding domain
Gene3DG3DSA:2.20.25.803.5E-482127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
CNENSQERRN PEHDLDVHEH QNIDPCIDME FDSLDDVKNL YTSFAKKEGF GIRTLSTKTN  60
LCIFVCSNVG KHVDNNDKEE SNTITVKSKK KCSTSRTDCK ATLVVSKAKM RPKWTIITFN  120
NTHNHAMVSP KSINYLRCHK KMGGAAKNLV EQFDQEGLVS VACRIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0853s0010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356040.0AC135604.29 Medicago truncatula clone mth2-32p10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640623.11e-107protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072TDR21e-120A0A072TDR2_MEDTR; FAR1 DNA-binding domain protein (Fragment)
STRINGAES594792e-48(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1579835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-14FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]