PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr0856s0010.1

Common Name

MTR_0856s0010

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 160aa MW: 18421.9 Da PI: 8.1273

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr0856s0010.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.8	2.4e-15	48	132	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA + GF+ ++++s+k ++ge+ + C++ + +++ + +tr++ +C ak+ +k++ dg w+++k+e +H+H+ Medtr0856s0010.1 48 SFYREYALRKGFDWKIRTSRKG-KDGEVCYLILACTRDRAEVTKSVC---TLKTRPTMGKSCPAKICIKLKADGLWYINKFEPNHSHHT 132 5***************9998.8888******9887776555...89999******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-13	48	133	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MDNPNAFVDS GSIHDEGIEV DNFNVENEDA WWEPKTDMCF SSIDDVKSFY REYALRKGFD 60 WKIRTSRKGK DGEVCYLILA CTRDRAEVTK SVCTLKTRPT MGKSCPAKIC IKLKADGLWY 120 INKFEPNHSH HTSPTKARLF KANKNMDLHV KRTIQINDDA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr0856s0010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134521	0.0	AC134521.41 Medicago truncatula chromosome 6 clone mth2-31k24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642224.1	1e-112	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A072TPN7	1e-117	A0A072TPN7_MEDTR; FAR1 DNA-binding domain protein (Fragment)
STRING	XP_004488492.1	5e-70	(Cicer arietinum)
STRING	XP_004516444.1	2e-70	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr0856s0010.1
Entrez Gene	25481452

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]