PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1281s0010.1
Common NameMTR_1281s0010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 113aa    MW: 12906.5 Da    PI: 9.1141
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1281s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.51.6e-1131110163
              FAR1   1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCk 63 
                       +fY +YA+++GFs+r+  ++k     k+++++   ++vC+k+g+++ +  +             +  + ++++e+r+gC+
  Medtr1281s0010.1  31 DFYGNYAYNTGFSIRTMLKSKInsqnKKSDKVHYLRYVCNKQGFKKGSLLNpnnrptsdsplviEFVKVKEKPEERVGCN 110
                       6*************98665544445589999***************9988888888888888887778888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-831110IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MIHADSSQCY SPSNEESWKS LVFQSIKEIE DFYGNYAYNT GFSIRTMLKS KINSQNKKSD  60
KVHYLRYVCN KQGFKKGSLL NPNNRPTSDS PLVIEFVKVK EKPEERVGCN TD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1281s0010.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479631e-177AC147963.2 Medicago truncatula chromosome 1 clone mth2-42e19, complete sequence.
GenBankAC1668981e-177AC166898.17 Medicago truncatula clone mth2-70l3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441754.13e-70protein FAR1-RELATED SEQUENCE 5
RefseqXP_024626515.11e-68protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024632961.12e-68protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072TP966e-78A0A072TP96_MEDTR; FAR1 DNA-binding domain protein
STRINGAES614311e-72(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.17e-06FAR1-related sequence 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]