PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g006660.1
Common NameMTR_1g006660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 258aa    MW: 28551.8 Da    PI: 5.1732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g006660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-194595155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+++ +g
  Medtr1g006660.1 45 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALCVKG 95
                     68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-134595IPR001471AP2/ERF domain
PROSITE profilePS5103223.47246103IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2246104IPR016177DNA-binding domain
SMARTSM003808.2E-3746109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3246104IPR001471AP2/ERF domain
CDDcd000182.57E-2247105No hitNo description
PRINTSPR003679.4E-114758IPR001471AP2/ERF domain
PRINTSPR003679.4E-116985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRVSPQNSET ESTSNSSPYT TNSIQEDQES NNKKLKRNRD SNKHPVYRGV RMRNWGKWVS  60
EIREPRKKSR IWLGTFPTAE MAARAHDAAA LCVKGKSAIL NFPHLRDSLP KPVSLAPRDV  120
QAAAAKAAQM DIGKFELSSS SSSLSSLSTS SLTTMSTSTS LLMKTTKTLS SSADLSATSE  180
ELSEIIELPT LENGYDDVGK EEFVYVDSQA QDYAWMMYQQ PMTWLQTTQE EDGCCVGDDG  240
LVNNGVVTSF ESFMWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20431041173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g006660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588384.10.0dehydration-responsive element-binding protein 3
SwissprotQ9LYD35e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLG7IB480.0G7IB48_MEDTR; AP2 domain class transcription factor
STRINGAES586350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]