PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g008290.1

Common Name

MTR_1g008290

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 148aa MW: 17105.7 Da PI: 8.827

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g008290.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.5	1.1e-08	8	51	45	91
FAR1 45 kkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kk++++++++r+ +++C a l++k + +w+++++ ++HnH+l+p Medtr1g008290.1 8 KKRESTTQNPRPCLKVECGAALHIKSD---RWVIHDFIKDHNHDLFP 51 3445678999************988...************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-6	8	51	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MLARDMVKKR ESTTQNPRPC LKVECGAALH IKSDRWVIHD FIKDHNHDLF PAYAHYFLCH 60 RRINQAQKQC IETLQHIGVR PSKIFATLAK QHGGYEKVGC SEKDIINLLD KDRRLTLKSG 120 DANAMLECFT LMQEQNSRFF YAMENIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g008290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC175311	0.0	AC175311.4 Medicago truncatula clone mth2-45n8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630234.1	6e-68	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	G7I4B8	1e-108	G7I4B8_MEDTR; FAR-RED impaired response-like protein
STRING	AES58786	4e-90	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27905	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-29	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr1g008290.1
Entrez Gene	11433318

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]