PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g008740.2
Common NameMTR_1g008740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 349aa    MW: 39023.8 Da    PI: 9.12
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g008740.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.38.6e-55131411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL +k++++ + + ++i +vd++k+ePw+Lp k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  Medtr1g008740.2  13 LPPGFRFHPTDEELITYYLVNKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFN 106
                      79**********************999666699***************9999999**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++elvg+kktLvfykgrap+gekt+Wvmheyr+
  Medtr1g008740.2 107 SvTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 141
                      989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6111163IPR003441NAC domain
PROSITE profilePS5100559.54913163IPR003441NAC domain
PfamPF023651.3E-2814141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEMEGNREKE ETLPPGFRFH PTDEELITYY LVNKISDSVN FTCKAIGDVD LNKCEPWELP  60
GKAKMGTKEW YFFSLRDRKY PTGVRTNRAT NTGYWKTTGK DKEIFNSVTS ELVGMKKTLV  120
FYKGRAPRGE KTNWVMHEYR IHSKSSIRTN KQDEWVVSRV FRKSAGAKKY PSSSSNLTRA  180
VMNPYNINLE VGPPSFNNNM TPPTMMQHLG LDSATHFQLY GRNYINTGEV LRAGVPMHQY  240
GSHLSSSPLG GEGFTISGLN LNLGGSTSSQ TILRPMPSTT HTMAADFNSN MMTGANSNTL  300
VAAENNNNLG FGGGDQVNNA NPNHGNRYNM QGTMDHCVDL DHYWPPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-541216916171NO APICAL MERISTEM PROTEIN
1ut4_B6e-541216916171NO APICAL MERISTEM PROTEIN
1ut7_A6e-541216916171NO APICAL MERISTEM PROTEIN
1ut7_B6e-541216916171NO APICAL MERISTEM PROTEIN
3swm_A6e-541216919174NAC domain-containing protein 19
3swm_B6e-541216919174NAC domain-containing protein 19
3swm_C6e-541216919174NAC domain-containing protein 19
3swm_D6e-541216919174NAC domain-containing protein 19
3swp_A6e-541216919174NAC domain-containing protein 19
3swp_B6e-541216919174NAC domain-containing protein 19
3swp_C6e-541216919174NAC domain-containing protein 19
3swp_D6e-541216919174NAC domain-containing protein 19
4dul_A6e-541216916171NAC domain-containing protein 19
4dul_B6e-541216916171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.246490.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g008740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097091e-82AP009709.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35C22, TM1767, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588574.10.0protein ATAF2 isoform X1
TrEMBLG7I5240.0G7I524_MEDTR; NAC transcription factor-like protein
STRINGAES588250.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-108NAC domain containing protein 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]