PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g008970.1
Common NameMTR_1g008970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 254aa    MW: 29010.2 Da    PI: 10.469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g008970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09143176136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      + +WT+eE+  l++ +k +G+  W+ Ia+ +  gR 
  Medtr1g008970.1 143 KTPWTKEEESTLIKTHKIYGNS-WAEIAKFLH-GRI 176
                      579*****************99.********9.775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171414139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-973116IPR009057Homeodomain-like
PROSITE profilePS500904.00878104IPR017877Myb-like domain
SuperFamilySSF466893.01E-686115IPR009057Homeodomain-like
CDDcd001672.53E-4110137No hitNo description
PROSITE profilePS500905.715113137IPR017877Myb-like domain
PfamPF139211.7E-9116154No hitNo description
SuperFamilySSF466891.88E-22117180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-15117147IPR009057Homeodomain-like
PROSITE profilePS5129415.553138192IPR017930Myb domain
SMARTSM007178.5E-4142190IPR001005SANT/Myb domain
CDDcd001676.48E-6145175No hitNo description
Gene3DG3DSA:1.10.10.601.7E-11148181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTNRRVTGPT RRSTKGGWTE KESDLDLLQS QIPRVHTVSV CISIVKSRLE GPNFMIDVLE  60
FKKYQNLLTF CTFRSRSNSY QSVYSACVTG RTDVQCLHRW QKVLNPDLIK GPWSEQVAKS  120
LPGRIGKQCR ERWYNHLNPD IKKTPWTKEE ESTLIKTHKI YGNSWAEIAK FLHGRIGFAI  180
QKGLTAQLVA RLDSNSRHQE KMKTKKSNKI GERPLCSPPT RSGEQATRHG ECMYSRGELG  240
RPRLLTDDVA QTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-368318131148MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-368318131148MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g008970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2023801e-100AC202380.14 Medicago truncatula clone mth2-160m23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083843.13e-49transcription factor MYB3R-3
RefseqXP_027189441.12e-49transcription factor MYB3R-2-like
TrEMBLG7I5430.0G7I543_MEDTR; Myb transcription factor
STRINGAES588440.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.16e-44Homeodomain-like protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]