PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g008990.1
Common NameMTR_1g008990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 340aa    MW: 36963.7 Da    PI: 5.0713
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g008990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.51.4e-13170222459
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                       kr rrk +NRe+ArrsR+RK+a ++ Le  v++L  eN +L    ++l++ +++ 
  Medtr1g008990.1 170 MKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENASLF---KQLTDASQQF 222
                      79**************************************999...5555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-14167231IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.254169232IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-11169223No hitNo description
PfamPF001705.0E-12170221IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.3E-11171221No hitNo description
CDDcd147026.15E-8172223No hitNo description
PROSITE patternPS000360174189IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEPKWSTILP ATSIFSSFDD LKWITAEFDH ELFTKRPVTV ETAIDDNDVK PSKVDPFLGV  60
GDVCSDNIAN AADFHNLDAV TSFSTCGEPT NNILVCSQNL TPKNSTITAT IESQSSISAT  120
VTSPVSANKP SSSRENQTKG VTTTSGSSRD PSDEDDEAGP CEQSTNPVDM KRLRRKVSNR  180
ESARRSRRRK QAHLADLEVQ VEQLRLENAS LFKQLTDASQ QFRDANTNNR VLKSDVEALR  240
AKVKLAEDMV SRGTLPTFNN QLLQNQSQLN TTPPQINNSN LRCMAHVSPT ITVHGNDASY  300
GVSGQNSAIG LGDFDISCSH DFNNGVNSDA VSSLTSLWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173189RRKVSNRESARRSRRRK
2183190RRSRRRKQ
3185190SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.146780.0leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g008990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2023801e-164AC202380.14 Medicago truncatula clone mth2-160m23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588595.10.0basic leucine zipper 9
SwissprotQ6H5001e-59RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLG7I5450.0G7I545_MEDTR; BZIP transcription factor
STRINGAES588460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-47basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]