PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g012760.1
Common NameMTR_1g012760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 278aa    MW: 32075.5 Da    PI: 6.3202
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g012760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1271.5e-0861135790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      A+++GF +++sks+++     + +  + C+++g  ++++++     + +  ++++C  +l+    ++g+we+t +  +HnHe++
  Medtr1g012760.1  61 ATKLGFGIVISKSNNR----GTQTLLLECKRSGVYKKHSNR-----QDTRFKKCECPFRLRGYFLSSGVWELTVMCGKHNHEMM 135
                      7899*******98877....3557899*******9987655.....88899999999999999999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-661135IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTDRHKHFLR QPLSGMEDPS ADLKPDIAEP VDESLDFAKH FATDKEFTTR DDLLKWVRGE  60
ATKLGFGIVI SKSNNRGTQT LLLECKRSGV YKKHSNRQDT RFKKCECPFR LRGYFLSSGV  120
WELTVMCGKH NHEMMENLED NPIAGRLNEE EMKLVHEMTN NTVRPKNILM TLKKRRADDG  180
ITIKQIYNAR SRYNKSMKGP KSEELVDDDG VPKEDCSDIS ILPELEAIQI RFNNADYNTK  240
ILIKEQLHQI AFPETMAPCP PAEKENWDFY DFETCEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g012760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588789.10.0uncharacterized protein LOC11431780 isoform X2
TrEMBLG7I7I80.0G7I7I8_MEDTR; FAR1 DNA-binding domain protein
STRINGAES590400.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]