PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g013060.1

Common Name

MTR_1g013060

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 231aa MW: 26832.2 Da PI: 9.1863

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g013060.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.5	1.4e-15	39	131	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++v F+vr s+++ +ng + fvCskeg+ +kk+ + ++++++ tr C+a+ + k + gk+e+++l++ H+H+la Medtr1g013060.1 39 IYQNYAHSVVFNVRSSSKTIY-KNGVKRLKYFVCSKEGYLPYKKKDeaqsaVVVKSKRNSLTRERCNANAVFKWVEGGKYELARLDESHTHALA 131 7***********9987766.888899999***99998888777777788899********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-13	39	131	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MREYDKDVFL ENDFVPNCDE ELKPKVGQIF DTLKEGKQIY QNYAHSVVFN VRSSSKTIYK 60 NGVKRLKYFV CSKEGYLPYK KKDEAQSAVV VKSKRNSLTR ERCNANAVFK WVEGGKYELA 120 RLDESHTHAL ASPTKRSFLR STRKVNPIHK SLLHAYSREN IGPSKTFHLM KEQSRDYENV 180 GCKQKDLHNY SGDLQTLLKD SDANVFIDNF RRNQELNPSF FYAHEVDEED *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g013060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT033764	0.0	CT033764.1 Medicago truncatula chromosome 5 clone mth2-62e18, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024640717.1	1e-123	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A072VE81	1e-171	A0A072VE81_MEDTR; FAR1 DNA-binding domain protein
STRING	AES98791	1e-122	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15907	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Medtr1g013060.1
Entrez Gene	25481948

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]