PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g013760.1
Common NameMTR_1g013760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 286aa    MW: 32166.2 Da    PI: 7.4046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g013760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29140197258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv++s edp++++ tYegeHnh
  Medtr1g013760.1 140 MDGYQWRKYGQKVTRDNPSPRAYFRCSYApSCPVKKKVQKSVEDPTILVATYEGEHNH 197
                      6***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28130198IPR003657WRKY domain
PROSITE profilePS5081125.201134200IPR003657WRKY domain
SuperFamilySSF1182901.7E-24136199IPR003657WRKY domain
SMARTSM007741.2E-32139199IPR003657WRKY domain
PfamPF031064.7E-24141197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESTCVDTSL NLNVNASSIL KDEVLVEELH RLSSENKRLN ETLTNMCENY DTMQKQLNQL  60
MNQNFENQTQ QSRKRKAESE SCINMFGTVR GINIINNNNE CSTVTDEESL IKRPCRDISS  120
PKAYKVLVKT EASSNSLYVM DGYQWRKYGQ KVTRDNPSPR AYFRCSYAPS CPVKKKVQKS  180
VEDPTILVAT YEGEHNHGHE KAEISMISSQ SEEAPLGSVH VTSPQQIIQR TCSTMKLDNV  240
PKSSIQQFLV QQMATSLTND PNFTAALATA ISGRILDHTS NKDKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191391971471WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g013760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286600.0AC128660.31 Medicago truncatula clone mth2-14p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588828.10.0probable WRKY transcription factor 40
TrEMBLG7I7M70.0G7I7M7_MEDTR; Putative transcription factor WRKY family
STRINGAES590790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-64WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]