PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g015140.1

Common Name

MTR_1g015140

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

WRKY

Protein Properties

Length: 163aa MW: 18677.5 Da PI: 6.2694

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g015140.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.8e-32	101	159	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+++d ++v++tYeg H+h+ Medtr1g015140.1 101 LDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNNDSSYVITTYEGMHTHP 159 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-33	87	159	IPR003657	WRKY domain
PROSITE profile	PS50811	29.884	96	161	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-28	97	159	IPR003657	WRKY domain
SMART	SM00774	3.4E-37	101	160	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	102	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MTEKNPRTAN SSSPESDFSN QQWPFELSDY LSFDDNEWLQ NNPTTESLVF QANEVAGGSH 60 IEGSSSSIRD TNNMNMSGNE NWKKEVKERV AFKTKSLIEI LDDGYRWRKY GKKMVKNSPN 120 PRNYYRCSVE GCPVKKRVER DNNDSSYVIT TYEGMHTHPN SC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-27	89	158	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g015140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003588914.1	1e-119	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	1e-38	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	G7I8Z5	1e-118	G7I8Z5_MEDTR; Putative transcription factor WRKY family
STRING	AES59165	1e-119	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-40	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Medtr1g015140.1
Entrez Gene	11431461

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]