PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g015930.1
Common NameMTR_1g015930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 361aa    MW: 41904.3 Da    PI: 6.6077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g015930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05131154123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg+ ++++ +Lk+H +  H
  Medtr1g015930.1 131 YVCSVCGRKCKTNVDLKKHFKQlH 154
                      9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.1E-849121IPR029060PIN domain-like
PROSITE profilePS5015711.198131159IPR007087Zinc finger, C2H2
SMARTSM003550.0037131154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133154IPR007087Zinc finger, C2H2
CDDcd061672.79E-14144285No hitNo description
Gene3DG3DSA:3.40.50.10105.1E-8216286IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNTLSLHFYT PHSFLSLKPK PQPRIQCCST NNNIIDDIDM VKTKQGTYEQ KQNKVCVLWD  60
LDNKPPRGPP YNAAVSLKNL AERFGDVTDI SAYANRHAFI HLPQWVLNQR RERKNLDILE  120
RKGIINPPEP YVCSVCGRKC KTNVDLKKHF KQLHQRERQK KLNRLNSLKG KKRQKYKERF  180
VSGDDKYNDA VREILKPKVG YGLASELRRA GVFVKTVEDK PQAADWALKK QMMHSMSRGI  240
DWLFLVSDDS DFSEMLRKAR EANLGTVVVG DVDRALGRHA DLWVPWNAVE NGEVMDMDLI  300
PRNRDRRRTN STSTTMDDFG DVLFFHEGEE MEDDFMLEYS DDDDFDEDSD EEDEDGFYIY  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.179300.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g015930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1525510.0AC152551.33 Medicago truncatula clone mth2-24d6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588975.10.0uncharacterized protein LOC11415277
TrEMBLG7I9W50.0G7I9W5_MEDTR; C2H2 type zinc finger protein
STRINGAES592260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-153C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]