PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g016010.1
Common NameMTR_1g016010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 453aa    MW: 50683.1 Da    PI: 8.8262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g016010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-057092123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Medtr1g016010.1 70 FICEICNKGFQRDQNLQLHKRGH 92
                     89******************988 PP
2zf-C2H212.70.00039147169123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H + +
  Medtr1g016010.1 147 WKCEKCSKRYAVQSDWKAHSKIC 169
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-76992No hitNo description
Gene3DG3DSA:3.30.160.606.7E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.9E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8037092IPR007087Zinc finger, C2H2
SMARTSM003550.0227092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM0035597112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-7142167No hitNo description
SMARTSM00355130147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMKGLSVEEN MSNLTSASSE ISASSATKNG KASTNLEPQT KRKRNLPGHP DPEAQVLALS  60
PQTLLATNRF ICEICNKGFQ RDQNLQLHKR GHNLPWKLKK RNVNEIIRKK VYVCPEPTCV  120
HHDPSRALGD LTGIKKHFFR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TKEYKCDCGT  180
LFSRRDSFIT HRAFCDVLSQ ESASISAVNP LFSSHSQFHQ SHGFQPLSLK KEQDFNLRPE  240
IPLWLLPTHL NHFQNPNPTT LFPNNSFNSN NITTASPHMS ATALLQKASQ IGVTTVSKTE  300
PCRPHLMQTH VPSGMVMPSR EEIGTTGFSH CLASYGNKAA ITSDCFEESS SLLHDVMYGS  360
ESSHSQFEAV TAAMSMRGMF DTQRDNNNFE EQYSHFGKSN IIKNGGANDD EMTRDFLSLG  420
AFSQRDLFNI SGIDGPLSLH GKQNQIQNQT PW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34143209369Zinc finger protein JACKDAW
5b3h_F3e-34143209369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKKRNVNEIIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.78540.0flower| leaf| pod| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g016010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1529200.0AC152920.17 Medicago truncatula clone mth2-101o15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465889.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-119IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A072VP830.0A0A072VP83_MEDTR; C2H2-type zinc finger protein
STRINGXP_004498879.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-114indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]