PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g016170.1
Common NameMTR_1g016170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 306aa    MW: 33078.6 Da    PI: 9.8531
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g016170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17189222134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C t++TplWR+gp g+k+LCnaCG+++rk +
  Medtr1g016170.1 189 CSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKAR 222
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-12183223No hitNo description
SMARTSM004011.2E-17183234IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347183219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-15187222IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.71E-12188246No hitNo description
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
PfamPF003203.0E-15189222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTPVSLNPPG PNSLLQGQNQ FFNISPVNQD TPTFFNLLGD FGENYDHHHH QDHKLAFHHD  60
GSSSSNHQQQ LYNSSSESVM VDSSSARDTN LSSSLELEDS SKKNSHGSEK WISSKMRLMN  120
KMINTTATVA TTPIMRPNNS IAATTDKAIK TTTPMMSPSN FGTSPRNQNV RYSQTSPSSN  180
SGNNTVRVCS DCSTSHTPLW RSGPMGPKSL CNACGIRQRK ARRAMAEAAN GLATSPKTKV  240
LKIKKPTQFK TKNKASTSTS STSTTSAGSS SQDVKKLESF ALDYDYDEAA TAARLLVDIS  300
SGVTY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.194190.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g016170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0513820.0BT051382.1 Medicago truncatula clone MTYF1_F2_F3_F41G-J-17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588994.10.0GATA transcription factor 21
TrEMBLG7I9Y40.0G7I9Y4_MEDTR; GATA zinc finger protein
STRINGAES592450.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-18GATA family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]