PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g016200.1
Common NameMTR_1g016200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 105aa    MW: 12293.5 Da    PI: 11.0439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g016200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.72.8e-126295134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C  C t +TplW ++p g+k LCnaC l+ r+++
  Medtr1g016200.1 62 CFDCDTNTTPLWSSDPTGSKWLCNACRLRRRREE 95
                     99****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-456101IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-116095IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.9E-86093No hitNo description
PfamPF003201.5E-96294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.956292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MMPKQRRRKQ LLVLPKRRKQ MLASAAKKKK IKTTTEYELY PSFKPKYPRM RVSNIWLTIT  60
VCFDCDTNTT PLWSSDPTGS KWLCNACRLR RRREEAKADK GLDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129PKQRRRKQ
249QRRRKQ
31529KRRKQMLASAAKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g016200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1249681e-133AC124968.36 Medicago truncatula clone mth2-15e21, complete sequence.
GenBankAC1529201e-133AC152920.17 Medicago truncatula clone mth2-101o15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7I9Y76e-70G7I9Y7_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES592481e-70(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-10GATA family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]