PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g017570.1
Common NameMTR_1g017570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 146aa    MW: 17132.4 Da    PI: 9.579
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g017570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1160107552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      ++ rr+q+NRe+ArrsR RKk  +e+L++    L  eN++Lk++l   
  Medtr1g017570.1  60 RKIRRMQSNRESARRSRWRKKRHVENLTNDLNRLRMENRELKNQLGLT 107
                      6789**************************************888665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1056120IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.23158104IPR004827Basic-leucine zipper domain
PfamPF001704.7E-860105IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.59E-1260114No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-860108No hitNo description
CDDcd147022.40E-1361109No hitNo description
PROSITE patternPS0003606378IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSFHEEEYPV RFTCVPVHET MFTQGEIEEL FSLINQPVDP SSPGSGSQGS NRAVYSTRER  60
KIRRMQSNRE SARRSRWRKK RHVENLTNDL NRLRMENREL KNQLGLTMQY NLILSTENER  120
LRLESMSLLA TLLDLYRTLE TIISQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g017570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498959.14e-87basic leucine zipper 4
TrEMBLA0A072VDB11e-101A0A072VDB1_MEDTR; Basic leucine zipper transcription factor
STRINGXP_004498959.12e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59963052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.15e-17basic leucine-zipper 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]