PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g019110.1
Common NameMTR_1g019110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 181aa    MW: 20710.2 Da    PI: 9.1355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g019110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184392255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Medtr1g019110.1 43 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 92
                     69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3443106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2043101IPR016177DNA-binding domain
PROSITE profilePS5103221.79943100IPR001471AP2/ERF domain
PRINTSPR003671.4E-114455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2944101IPR001471AP2/ERF domain
CDDcd000181.10E-2644102No hitNo description
PfamPF008471.9E-104492IPR001471AP2/ERF domain
PRINTSPR003671.4E-1182102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEEEDREYCC SMNSRTTNSP IAIDHKNNNN NKGMKKEKKA MKPYRGIRMR KWGKWVAEIR  60
EPNKRSRIWL GSYITPIAAA RAYDTAVFYL RGPSANLNFP ELLFKDQQED EENLQQHGNM  120
SADSIRKKAA QVGARVDAIE TNSLINHHHH HHVSSNNHVH SNSTSSLKPD LNEFPKPEDC  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1442100463ATERF1
3gcc_A1e-1442100463ATERF1
5wx9_A1e-14441001572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.85740.0root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g019110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378240.0AC137824.25 Medicago truncatula clone mth2-10l10, complete sequence.
GenBankAC1484860.0AC148486.17 Medicago truncatula clone mth2-56d23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589156.21e-135ethylene-responsive transcription factor RAP2-1
SwissprotO221744e-51ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLG7I2D81e-133G7I2D8_MEDTR; Dehydration-responsive element-binding protein
STRINGAES594071e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-46related to AP2 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]