PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g019580.1
Common NameMTR_1g019580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 132aa    MW: 14977.4 Da    PI: 6.7608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g019580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-1039130898
                      -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       +  + g l l   f+ +h  ++ +e++ + l de+g++W+  l+++ ++ + + +++GW++ v+a ++keg  vv    g  ++ +l++ v+r
  Medtr1g019580.1  39 LYDVTAGYLKLAE-FCFAHmALD-RETMVIDLVDENGNVWNCSLQFSETPYAdFKIGGGWERLVQARRIKEGACVVVGAPGVgMNLTLFFCVIR 130
                      5555555666664.555662555.6889******************8888878***********************998888899999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-733112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-833118IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-842131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MNFRVHRIAV PVTPDWVVPR PFVHDVFNFQ LTYEKIMSLY DVTAGYLKLA EFCFAHMALD  60
RETMVIDLVD ENGNVWNCSL QFSETPYADF KIGGGWERLV QARRIKEGAC VVVGAPGVGM  120
NLTLFFCVIR R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g019580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1514241e-141AC151424.15 Medicago truncatula clone mth2-101c17, complete sequence.
GenBankAC1576451e-141AC157645.8 Medicago truncatula clone mth2-70l21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469920.12e-60uncharacterized protein LOC25485277
RefseqXP_024630903.11e-60uncharacterized protein LOC25485279
TrEMBLG7I3L81e-93G7I3L8_MEDTR; Transmembrane protein, putative
STRINGAES594533e-94(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]