PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g019850.1
Common NameMTR_1g019850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 238aa    MW: 26768.6 Da    PI: 6.254
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g019850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-1784166190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fY ++Ak+ GF vr++++k++          f C +eg++  + ++ e+ +r+r+++rt+Cka+l+++k   +gkw+++++++ HnH ++
  Medtr1g019850.1  84 EFYTSFAKKEGFGVRVRSTKQK-------FCLFECANEGTHIVKGEN-EEGKRKRSTSRTDCKASLTISKAGkRGKWVIKSINNVHNHGMV 166
                      6***************987776.......678***********9999.9*********************998***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1484166IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDVGIPMECS NRTGCDVTST EFYCRRYMDN KCVENSTIEC LEDHEIVDDV SNDLEPNSEN  60
SKSSEANICP IVDMEFDSIA DVKEFYTSFA KKEGFGVRVR STKQKFCLFE CANEGTHIVK  120
GENEEGKRKR STSRTDCKAS LTISKAGKRG KWVIKSINNV HNHGMVSPKS VAYLRSHKKM  180
IAATKSLVEK FDEEGVPTMP FLVGIAGIIL EISEEEILMW EMLKLSLKYQ IPFVHKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g019850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1679570.0AC167957.40 Medicago truncatula clone mth2-106h7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636596.16e-51protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7I4G21e-175G7I4G2_MEDTR; FAR1 DNA-binding domain protein
STRINGAES594791e-152(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1579835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]