PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021295.1
Common NameMTR_1g021295
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 222aa    MW: 24352.3 Da    PI: 7.5024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021295.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15116209197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k+ +  +v+ s+ + +p +f ++h  +  +++ + l++++g+ W v+    +k   ++ l +GW +Fv+ n +k+gD+++F+l+++ ef  +
  Medtr1g021295.1 116 FVKIIKAFNVSGSRTINMPYQFSTAHLPN--SDTPIFLQNLKGEHWLVNSVTkTKIHTSHSLCGGWMDFVRGNSIKVGDVCIFELIQECEF--R 205
                      778888888999999***********533..4556*************99554777777***************************99888..6 PP

                      EEEE CS
               B3  94 vkvf 97 
                      v+++
  Medtr1g021295.1 206 VRII 209
                      7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-21107210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22111208IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-20114209No hitNo description
PROSITE profilePS5086313.211116212IPR003340B3 DNA binding domain
PfamPF023625.3E-13116209IPR003340B3 DNA binding domain
SMARTSM010193.0E-9116212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MADCGGGFFN NRHDLFVKDD ITMVFCGGYG GAYGDFWLSV MVCHLPSIIL LLFILAFPLM  60
APIKLSLSQV ISEAASPHRS GKVDDHCILS GASLSKSTAL IEEKIAQSFS SSFPYFVKII  120
KAFNVSGSRT INMPYQFSTA HLPNSDTPIF LQNLKGEHWL VNSVTKTKIH TSHSLCGGWM  180
DFVRGNSIKV GDVCIFELIQ ECEFRVRIIA EVGKDGLVLP R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484041e-151AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024881e-151AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589268.31e-101B3 domain-containing protein REM16
TrEMBLA0A072VF371e-162A0A072VF37_MEDTR; B3 DNA-binding domain protein
STRINGAES595191e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2790923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-11B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]